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Genom 2005 is a feature rich and user friendly application for analysing array-experiments (e.g. from provider Affymetrix).
Many publications have been released about our previous developed program gEn0M (GENOM 2005 is the successor of gEn0M). Please take a look at the publications page for some of them.
Features for microarray analysis software
- Analysis of AffyMetrix-Arrays (cDNA-Arrays or similar technologies could be easily integrated as well)
- Normalisation of raw data
- Many additional gene information (official gene names, location, function prediction, sequences, database references (GeneOntology, InterPro, SwissPROT, ENSEMBL, GeneBank...)
- Multiple analysis methods (cluster, Support-Vector-Machine, statistical methods (e.g. TTest))
- Automatic pathway mapping (BioCarta, GenMAPP, KEGG...)
- Integrated pathway editor (user friendly drag and drop operation)
- Function prediction
- Sequence analysis
You can display each signal on your array in a 3D view. When comparing it with another array you can easily find interesting probesets. You can also sort the signals by gene function or gene location.
Often you have no information about a probeset because it's an EST or it has not been analysed before. With this module you can get new information from probesets or custom sequences over a BLAST search (online). Possible new gene functions will then be shown.
In this screenshot, you can directly access the links for more information about your query. Unlike in other programs you can click on a link and directly access the result page without filling out web forms.
All arrays from Affymetrix are supported. New systems can easily be implemtened on request.
Supported affymetrix arrays
AG ATH1-121501 Barley1 Bsubtilis Canine Chicken Celegans DrosGenome1 Drosophila_2 Ecoli_ASv2 Ecoli E_coli_2 HC_g110 HG-Focus HG-U133A_2 HG-U133A HG-U133B HG-U133_Plus_2 HG_U95Av2 HuEx-1 HG_U95B HG_U95C HG_U95D HG_U95E Hu6800 Maize Medicago HG_U74Av2 MG_U74Bv2 MG_U74Cv2 MOE430A MOE430B Mouse430A_2 Mouse430_2 Mu11KsubA Mu11KsubB Nimble-Arrays Porchine RAE230A RAE230B Rat230_2 RG_U34A RG_U34B RG_U34C Rice RN_U34 RT_U34 Pae_G1a Pasmodium_Anopheles Sugar_Cane Soybean S_aureus Tomato U133_X3P Vitis_Vinifera Xenopus_laevis Yeast_2 YG_S98 Zebrafish Bovine Hu35KsubB Hu35KsubC Hu35KsubD Hu35KsubA HuGeneFlsubA HuGeneFlsubB HuGeneFlsubC HuGeneFlsubD HuGeneFl Array MG-U74A MG-U74B MG-U74C Mu19KsubA Mu19KsubB Mu19KsubC Mu6500subA Mu6500subB Mu6500subC Mu6500subD Wheat ....
Custom Version or Feature Request
Please contact us if you need any custom version or if you are missing an important feature in the software. We are glad to help you with any problems you have.